Comments on: Molecules and supercomputers in Second Life http://eightbar.co.uk/2008/01/14/molecules-and-supercomputers-in-second-life/ Raising The Eight Bar Mon, 06 Oct 2008 17:13:40 +0000 http://wordpress.org/?v=abc By: Hiro Sheridan http://eightbar.co.uk/2008/01/14/molecules-and-supercomputers-in-second-life/#comment-239646 Hiro Sheridan Fri, 02 May 2008 12:57:25 +0000 http://eightbar.co.uk/?p=425#comment-239646 As Peter mentioned above, we've been doing chemistry in SL for over a year now. For a brief synopsis see here: http://slusage.com/chemistry.asp As Peter mentioned above, we’ve been doing chemistry in SL for over a year now. For a brief synopsis see here: http://slusage.com/chemistry.asp

]]> By: http://www.youtube.com/watch?v=B_eYMaiynh4 http://eightbar.co.uk/2008/01/14/molecules-and-supercomputers-in-second-life/#comment-221999 http://www.youtube.com/watch?v=B_eYMaiynh4 Fri, 15 Feb 2008 13:48:41 +0000 http://eightbar.co.uk/?p=425#comment-221999 <strong>Bodybuilding Protein</strong> Pure Liquid Bodybuilding Protein Bodybuilding Protein

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]]> By: UgoTrade » Blog Archive » “Exploring Reality in Virtual Worlds” with Piet Hut http://eightbar.co.uk/2008/01/14/molecules-and-supercomputers-in-second-life/#comment-201341 UgoTrade » Blog Archive » “Exploring Reality in Virtual Worlds” with Piet Hut Tue, 15 Jan 2008 05:59:23 +0000 http://eightbar.co.uk/?p=425#comment-201341 [...] I think QSL will be visiting the, “The Rhodospin Membrane Protein,” soon. This build on the IBM Research Shared Work Island resulted from a simulation done on the Blue Gene supercomputer. In the picture below, Zha Ewry, Pema Pera and I are sitting in the molecule discussing the meta implications of a visualization of a visual molecule in a virtual world (for more on this build see this post on eightbar, SLNN, and the molecule tour on Destroy TV’s Flickr photostream). [...] [...] I think QSL will be visiting the, “The Rhodospin Membrane Protein,” soon. This build on the IBM Research Shared Work Island resulted from a simulation done on the Blue Gene supercomputer. In the picture below, Zha Ewry, Pema Pera and I are sitting in the molecule discussing the meta implications of a visualization of a visual molecule in a virtual world (for more on this build see this post on eightbar, SLNN, and the molecule tour on Destroy TV’s Flickr photostream). [...]

]]> By: Peter Miller http://eightbar.co.uk/2008/01/14/molecules-and-supercomputers-in-second-life/#comment-201019 Peter Miller Mon, 14 Jan 2008 11:58:55 +0000 http://eightbar.co.uk/?p=425#comment-201019 There is actually quite a lot of molecule rezzing going on in SL, albeit on a smaller scale than rhodopsin (you might want to fix that link btw). You can rez a peptide live on IBM Almaden and there is even an SL Molecular Structure Group (which includes an IBM av) due to have its first meeting later this month. There is a fledgling database of structure availability/deployment hosted off the wiki at http://secondlifemolecules.wikispaces.com/proteins as well as a script that does a little of the parsing from pdb files. As a personal project I'm hoping to produce a toolkit that makes this kind of build more accessible to teachers and students. We had an informal meeting on ANGEL just before Christmas which I recorded on my blog (http://tidalblog.blogspot.com/2007/12/protein-fest-first.html). It was just great seeing those structures rez! (SL: Graham Mills) There is actually quite a lot of molecule rezzing going on in SL, albeit on a smaller scale than rhodopsin (you might want to fix that link btw). You can rez a peptide live on IBM Almaden and there is even an SL Molecular Structure Group (which includes an IBM av) due to have its first meeting later this month. There is a fledgling database of structure availability/deployment hosted off the wiki at http://secondlifemolecules.wikispaces.com/proteins as well as a script that does a little of the parsing from pdb files. As a personal project I’m hoping to produce a toolkit that makes this kind of build more accessible to teachers and students. We had an informal meeting on ANGEL just before Christmas which I recorded on my blog (http://tidalblog.blogspot.com/2007/12/protein-fest-first.html). It was just great seeing those structures rez! (SL: Graham Mills)

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